IL_7DUK_023

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_023 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.0949

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7DUK|1|A|U|580
7DUK|1|A|G|581
7DUK|1|A|U|582
7DUK|1|A|A|583
7DUK|1|A|G|584
*
7DUK|1|A|U|757
7DUK|1|A|G|758
7DUK|1|A|A|759
7DUK|1|A|G|760
7DUK|1|A|G|761

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17