IL_7DUK_031

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

7DUK|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1007

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7DUK|1|A|G|683
7DUK|1|A|A|684
7DUK|1|A|G|685
7DUK|1|A|U|686
7DUK|1|A|A|687
7DUK|1|A|G|688
*
7DUK|1|A|C|699
7DUK|1|A|G|700
7DUK|1|A|C|701
7DUK|1|A|A|702
7DUK|1|A|G|703
7DUK|1|A|A|704
7DUK|1|A|U|705
7DUK|1|A|A|706
7DUK|1|A|C|707

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain K

30S ribosomal protein S11