IL_7DUK_034

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0713

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7DUK|1|A|G|887
7DUK|1|A|G|888
7DUK|1|A|A|889
7DUK|1|A|G|890
7DUK|1|A|U|891
7DUK|1|A|A|892
7DUK|1|A|C|893
7DUK|1|A|G|894
*
7DUK|1|A|U|905
7DUK|1|A|G|906
7DUK|1|A|A|907
7DUK|1|A|A|908
7DUK|1|A|A|909
7DUK|1|A|C|910

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12