IL_7DUK_043

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

7DUK|1|A|C|1200, 7DUK|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_043 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0682

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7DUK|1|A|G|1057
7DUK|1|A|G|1058
*
7DUK|1|A|U|1199
7DUK|1|A|C|1200
7DUK|1|A|A|1201
7DUK|1|A|G|1202
7DUK|1|A|C|1203

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z