IL_7DUK_058

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

7DUK|1|A|G|1443, 7DUK|1|A|A|1446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_058 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1431

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93811.1

Basepair signature

cWW-tHS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

7DUK|1|A|C|1440
7DUK|1|A|G|1441
7DUK|1|A|G|1442
7DUK|1|A|G|1443
7DUK|1|A|A|1446
7DUK|1|A|G|1447
*
7DUK|1|A|C|1459
7DUK|1|A|A|1460
7DUK|1|A|G|1461

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20