3D structure

PDB id
7DUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
7DUL|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7DUL_031 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.0976
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

7DUL|1|A|G|683
7DUL|1|A|A|684
7DUL|1|A|G|685
7DUL|1|A|U|686
7DUL|1|A|A|687
7DUL|1|A|G|688
*
7DUL|1|A|C|699
7DUL|1|A|G|700
7DUL|1|A|C|701
7DUL|1|A|A|702
7DUL|1|A|G|703
7DUL|1|A|A|704
7DUL|1|A|U|705
7DUL|1|A|A|706
7DUL|1|A|C|707

Current chains

Chain A
30S Ribosomal RNA rRNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


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