IL_7DUL_061

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

7DUL|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUL_061 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1362

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7DUL|1|A|G|662
7DUL|1|A|A|663
7DUL|1|A|G|664
7DUL|1|A|A|665
7DUL|1|A|G|666
*
7DUL|1|A|U|740
7DUL|1|A|G|741
7DUL|1|A|G|742
7DUL|1|A|U|743

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18