IL_7EEO_001
3D structure
- PDB id
- 7EEO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.701 Å
Loop
- Sequence
- (OMC)(OMU)AG(OMU)(A2M)(OMC)*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, OMU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7EEO_001 not in the Motif Atlas
- Geometric match to IL_4V9F_019
- Geometric discrepancy: 0.1523
- The information below is about IL_4V9F_019
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7EEO|1|A|OMC|6
7EEO|1|A|OMU|7
7EEO|1|A|DA|8
7EEO|1|A|DG|9
7EEO|1|A|OMU|10
7EEO|1|A|A2M|11
7EEO|1|A|OMC|12
*
7EEO|1|A|G|17
7EEO|1|A|G|18
7EEO|1|A|A|19
7EEO|1|A|C|20
7EEO|1|A|C|21
7EEO|1|A|G|22
Current chains
- Chain A
- DNA/RNA (27-MER)
Nearby chains
- Chain B
- DNA/RNA (27-MER)
Coloring options: