IL_7EFH_002

3D structure

PDB id

7EFH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA kink-turn motif

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

7EFH|1|A|A|6||||7_554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7EFH_002 not in the Motif Atlas

Geometric match to IL_5FJC_002

Geometric discrepancy: 0.095

The information below is about IL_5FJC_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7EFH|1|A|G|13
7EFH|1|A|G|14
7EFH|1|A|G|15
7EFH|1|A|A|16
7EFH|1|A|G|17
*
7EFH|1|A|C|3||||7_554
7EFH|1|A|G|4||||7_554
7EFH|1|A|A|5||||7_554
7EFH|1|A|A|6||||7_554
7EFH|1|A|G|7||||7_554
7EFH|1|A|A|8||||7_554
7EFH|1|A|A|9||||7_554
7EFH|1|A|C|10||||7_554

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')

Nearby chains