IL_7EI8_001
3D structure
- PDB id
- 7EI8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA kink-turn motif with 2-aminopurine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- C(2PR)(2PR)(2PR)(2PR)AAC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 2PR
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7EI8_001 not in the Motif Atlas
- Geometric match to IL_5G4T_002
- Geometric discrepancy: 0.1414
- The information below is about IL_5G4T_002
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
7EI8|1|A|C|3
7EI8|1|A|2PR|4
7EI8|1|A|2PR|5
7EI8|1|A|2PR|6
7EI8|1|A|2PR|7
7EI8|1|A|A|8
7EI8|1|A|A|9
7EI8|1|A|C|10
*
7EI8|1|B|G|13
7EI8|1|B|G|14
7EI8|1|B|G|15
7EI8|1|B|A|16
7EI8|1|B|G|17
Current chains
- Chain A
- RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
- Chain B
- RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Nearby chains
- Chain C
- RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Coloring options: