IL_7EI8_002
3D structure
- PDB id
- 7EI8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA kink-turn motif with 2-aminopurine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGAG*C(2PR)(2PR)(2PR)(2PR)AAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 2PR
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7EI8_002 not in the Motif Atlas
- Geometric match to IL_8VTW_046
- Geometric discrepancy: 0.1268
- The information below is about IL_8VTW_046
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7EI8|1|A|G|13
7EI8|1|A|G|14
7EI8|1|A|G|15
7EI8|1|A|A|16
7EI8|1|A|G|17
*
7EI8|1|B|C|3
7EI8|1|B|2PR|4
7EI8|1|B|2PR|5
7EI8|1|B|2PR|6
7EI8|1|B|2PR|7
7EI8|1|B|A|8
7EI8|1|B|A|9
7EI8|1|B|C|10
Current chains
- Chain A
- RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
- Chain B
- RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Nearby chains
- Chain D
- RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Coloring options: