IL_7ELP_004

3D structure

PDB id

7ELP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.79 Å

Loop

Sequence

CAG*CCCGG

Length

8 nucleotides

Bulged bases

7ELP|1|B|C|34||||1_657, 7ELP|1|B|G|35||||1_657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ELP_004 not in the Motif Atlas

Homologous match to IL_7ELQ_002

Geometric discrepancy: 0.3482

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7ELP|1|B|C|15||||1_657
7ELP|1|B|A|16||||1_657
7ELP|1|B|G|17||||1_657
*
7ELP|1|B|C|32||||1_657
7ELP|1|B|C|33||||1_657
7ELP|1|B|C|34||||1_657
7ELP|1|B|G|35||||1_657
7ELP|1|B|G|36||||1_657

Current chains

Chain B

NMT1_Ir(46-MER)

Nearby chains