IL_7ELS_002

3D structure

PDB id

7ELS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of xanthine riboswitch with 8-azaxanthine

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CCCGG

Length

8 nucleotides

Bulged bases

7ELS|1|A|C|34||||1_457, 7ELS|1|A|G|35||||1_457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ELS_002 not in the Motif Atlas

Homologous match to IL_7ELQ_002

Geometric discrepancy: 0.1822

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7ELS|1|A|C|15||||1_457
7ELS|1|A|A|16||||1_457
7ELS|1|A|G|17||||1_457
*
7ELS|1|A|C|32||||1_457
7ELS|1|A|C|33||||1_457
7ELS|1|A|C|34||||1_457
7ELS|1|A|G|35||||1_457
7ELS|1|A|G|36||||1_457

Current chains

Chain A

NMT1_8-azaxanthine (46-MER)

Nearby chains