IL_7EOK_002

3D structure

PDB id

7EOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pepper aptamer in complex with HBC485

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGG*UGUCG

Length

9 nucleotides

Bulged bases

7EOK|1|A|G|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7EOK_002 not in the Motif Atlas

Geometric match to IL_7EOM_002

Geometric discrepancy: 0.1361

The information below is about IL_7EOM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26728.2

Basepair signature

cWW-cSH-R-cSH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7EOK|1|A|C|7
7EOK|1|A|U|8
7EOK|1|A|G|9
7EOK|1|A|G|10
*
7EOK|1|A|U|40
7EOK|1|A|G|41
7EOK|1|A|U|42
7EOK|1|A|C|43
7EOK|1|A|G|44

Current chains

Chain A

Pepper (49-MER)

Nearby chains