Motif IL_26728.2 Version IL_26728.2 of this group appears in releases 3.84 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-7 | 3-7 | 5-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7SZU_002 | 7SZU | 0.2439 | 0 | R | RNA aptamer | U | 21 | G | 22 | U | 23 | C | 24 | G | 25 | * | C | 52 | U | 53 | G | 54 | G | 55 | cWW | cSH | ntSH | cWw | cWW |
2 | IL_7EOM_002 | 7EOM | 0.0000 | 0 | A | Pepper (49-MER) | U | 40 | G | 41 | U | 42 | C | 43 | G | 44 | * | C | 7 | U | 8 | G | 9 | G | 10 | |||||
3 | IL_7EOG_002 | 7EOG | 0.0591 | 0 | A | Pepper (49-MER) | U | 40 | G | 41 | U | 42 | C | 43 | G | 44 | * | C | 7 | U | 8 | G | 9 | G | 10 |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUCG*CUGG | 3 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUC*UG | 3 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-R-cSH-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.12 | Max 0.25
Coloring options: