IL_7F0D_016

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

7F0D|1|A|G|592, 7F0D|1|A|A|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_016 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.1626

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|G|570
7F0D|1|A|U|571
7F0D|1|A|A|572
7F0D|1|A|C|573
*
7F0D|1|A|G|584
7F0D|1|A|A|585
7F0D|1|A|G|586
7F0D|1|A|U|587
7F0D|1|A|G|588
7F0D|1|A|A|589
7F0D|1|A|A|590
7F0D|1|A|A|591
7F0D|1|A|G|592
7F0D|1|A|A|593
7F0D|1|A|G|594
7F0D|1|A|U|595
7F0D|1|A|A|596
7F0D|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24