IL_7F0D_035

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

7F0D|1|A|U|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_035 not in the Motif Atlas

Geometric match to IL_7RQB_029

Geometric discrepancy: 0.173

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

7F0D|1|A|G|993
7F0D|1|A|C|994
7F0D|1|A|U|995
7F0D|1|A|A|996
7F0D|1|A|C|997
7F0D|1|A|U|998
*
7F0D|1|A|A|1038
7F0D|1|A|A|1039
7F0D|1|A|A|1040
7F0D|1|A|C|1041

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16