IL_7F0D_042

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

7F0D|1|A|C|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_042 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3689

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

7F0D|1|A|G|1140
7F0D|1|A|C|1141
7F0D|1|A|G|1142
*
7F0D|1|A|C|1279
7F0D|1|A|C|1280

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20