IL_7F0D_050
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7F0D_050 not in the Motif Atlas
- Geometric match to IL_7RQB_049
- Geometric discrepancy: 0.1208
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7F0D|1|A|A|1393
7F0D|1|A|U|1394
7F0D|1|A|G|1395
7F0D|1|A|A|1396
7F0D|1|A|G|1397
7F0D|1|A|U|1398
7F0D|1|A|A|1399
7F0D|1|A|G|1400
*
7F0D|1|A|C|2249
7F0D|1|A|G|2250
7F0D|1|A|A|2251
7F0D|1|A|A|2252
7F0D|1|A|A|2253
7F0D|1|A|U|2254
7F0D|1|A|U|2255
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
Coloring options: