IL_7F0D_062

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*AG

Length

6 nucleotides

Bulged bases

7F0D|1|A|A|1591

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_062 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.3832

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7F0D|1|A|C|1589
7F0D|1|A|G|1590
7F0D|1|A|A|1591
7F0D|1|A|U|1592
*
7F0D|1|A|A|1614
7F0D|1|A|G|1615

Current chains

Chain A

23S rRNA

Nearby chains