IL_7F0D_077

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7F0D|1|A|G|1934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_077 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1214

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7F0D|1|A|C|1921
7F0D|1|A|G|1922
7F0D|1|A|U|1923
7F0D|1|A|A|1924
7F0D|1|A|A|1925
7F0D|1|A|C|1926
*
7F0D|1|A|G|1931
7F0D|1|A|G|1932
7F0D|1|A|A|1933
7F0D|1|A|G|1934
7F0D|1|A|A|1935
7F0D|1|A|A|1936
7F0D|1|A|G|1937

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2