IL_7F0D_080

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7F0D|1|A|G|2035, 7F0D|1|A|U|2050, 7F0D|1|A|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_080 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.108

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7F0D|1|A|U|2032
7F0D|1|A|G|2033
7F0D|1|A|C|2034
7F0D|1|A|G|2035
7F0D|1|A|A|2036
7F0D|1|A|A|2037
7F0D|1|A|G|2038
*
7F0D|1|A|C|2047
7F0D|1|A|G|2048
7F0D|1|A|A|2049
7F0D|1|A|U|2050
7F0D|1|A|G|2051
7F0D|1|A|U|2052
7F0D|1|A|A|2053
7F0D|1|A|U|2054
7F0D|1|A|A|2055

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2