IL_7F0D_092

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7F0D|1|A|A|2677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_092 not in the Motif Atlas

Geometric match to IL_5TBW_094

Geometric discrepancy: 0.1745

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7F0D|1|A|G|2307
7F0D|1|A|A|2308
*
7F0D|1|A|U|2676
7F0D|1|A|A|2677
7F0D|1|A|C|2678
7F0D|1|A|C|2679

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2