IL_7F0D_093

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAC*GCGGG

Length

9 nucleotides

Bulged bases

7F0D|1|A|G|2476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_093 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3079

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|C|2318
7F0D|1|A|A|2319
7F0D|1|A|A|2320
7F0D|1|A|C|2321
*
7F0D|1|A|G|2473
7F0D|1|A|C|2474
7F0D|1|A|G|2475
7F0D|1|A|G|2476
7F0D|1|A|G|2477

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28