IL_7F0D_095

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGAC*GUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGA

Length

72 nucleotides

Bulged bases

7F0D|1|A|G|2347, 7F0D|1|A|G|2349, 7F0D|1|A|U|2369, 7F0D|1|A|A|2372, 7F0D|1|A|C|2375, 7F0D|1|A|U|2376, 7F0D|1|A|C|2377, 7F0D|1|A|G|2388, 7F0D|1|A|G|2390, 7F0D|1|A|G|2393, 7F0D|1|A|G|2394, 7F0D|1|A|A|2395, 7F0D|1|A|G|2396, 7F0D|1|A|U|2397, 7F0D|1|A|U|2401, 7F0D|1|A|C|2414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F0D|1|A|U|2344
7F0D|1|A|U|2345
7F0D|1|A|U|2346
7F0D|1|A|G|2347
7F0D|1|A|U|2348
7F0D|1|A|G|2349
7F0D|1|A|U|2350
7F0D|1|A|A|2351
7F0D|1|A|G|2352
7F0D|1|A|G|2353
7F0D|1|A|A|2354
7F0D|1|A|U|2355
7F0D|1|A|A|2356
7F0D|1|A|G|2357
7F0D|1|A|G|2358
7F0D|1|A|U|2359
7F0D|1|A|G|2360
7F0D|1|A|G|2361
7F0D|1|A|G|2362
7F0D|1|A|A|2363
7F0D|1|A|G|2364
7F0D|1|A|A|2365
7F0D|1|A|C|2366
7F0D|1|A|U|2367
7F0D|1|A|G|2368
7F0D|1|A|U|2369
7F0D|1|A|G|2370
7F0D|1|A|A|2371
7F0D|1|A|A|2372
7F0D|1|A|A|2373
7F0D|1|A|C|2374
7F0D|1|A|C|2375
7F0D|1|A|U|2376
7F0D|1|A|C|2377
7F0D|1|A|G|2378
7F0D|1|A|A|2379
7F0D|1|A|C|2380
*
7F0D|1|A|G|2385
7F0D|1|A|U|2386
7F0D|1|A|U|2387
7F0D|1|A|G|2388
7F0D|1|A|G|2389
7F0D|1|A|G|2390
7F0D|1|A|G|2391
7F0D|1|A|C|2392
7F0D|1|A|G|2393
7F0D|1|A|G|2394
7F0D|1|A|A|2395
7F0D|1|A|G|2396
7F0D|1|A|U|2397
7F0D|1|A|C|2398
7F0D|1|A|G|2399
7F0D|1|A|U|2400
7F0D|1|A|U|2401
7F0D|1|A|G|2402
7F0D|1|A|U|2403
7F0D|1|A|U|2404
7F0D|1|A|G|2405
7F0D|1|A|A|2406
7F0D|1|A|A|2407
7F0D|1|A|A|2408
7F0D|1|A|U|2409
7F0D|1|A|A|2410
7F0D|1|A|C|2411
7F0D|1|A|C|2412
7F0D|1|A|A|2413
7F0D|1|A|C|2414
7F0D|1|A|U|2415
7F0D|1|A|C|2416
7F0D|1|A|U|2417
7F0D|1|A|G|2418
7F0D|1|A|A|2419

Current chains

Chain A

23S rRNA

Nearby chains