IL_7F0D_102

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

7F0D|1|A|U|2729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_102 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.1958

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7F0D|1|A|A|2697
7F0D|1|A|U|2698
7F0D|1|A|C|2699
*
7F0D|1|A|G|2727
7F0D|1|A|G|2728
7F0D|1|A|U|2729
7F0D|1|A|U|2730
7F0D|1|A|U|2731

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16