IL_7F0D_129

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_129 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0987

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7F0D|1|A|G|1901
7F0D|1|A|G|1902
7F0D|1|A|A|1903
7F0D|1|A|A|1904
7F0D|1|A|C|1905
7F0D|1|A|U|1906
7F0D|1|A|C|1907
7F0D|1|A|G|1908
7F0D|1|A|G|1909
*
7F0D|1|A|C|2228
7F0D|1|A|U|2229
7F0D|1|A|G|2230
7F0D|1|A|U|2231
7F0D|1|A|C|2232

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14