3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
Length
28 nucleotides
Bulged bases
7F5S|1|L5|C|1935, 7F5S|1|L5|A|2041, 7F5S|1|L5|G|2049
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7F5S_076 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.1706
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7F5S|1|L5|G|1933
7F5S|1|L5|A|1934
7F5S|1|L5|C|1935
7F5S|1|L5|C|1936
7F5S|1|L5|C|1937
7F5S|1|L5|C|1938
7F5S|1|L5|A|1939
7F5S|1|L5|G|1940
7F5S|1|L5|A|1941
7F5S|1|L5|A|1942
7F5S|1|L5|A|1943
7F5S|1|L5|A|1944
*
7F5S|1|L5|U|2038
7F5S|1|L5|G|2039
7F5S|1|L5|A|2040
7F5S|1|L5|A|2041
7F5S|1|L5|A|2042
7F5S|1|L5|A|2043
7F5S|1|L5|U|2044
7F5S|1|L5|G|2045
7F5S|1|L5|G|2046
7F5S|1|L5|A|2047
7F5S|1|L5|U|2048
7F5S|1|L5|G|2049
7F5S|1|L5|OMG|2050
7F5S|1|L5|C|2051
7F5S|1|L5|G|2052
7F5S|1|L5|C|2053

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LB
60S ribosomal protein L3
Chain LF
60S ribosomal protein L7
Chain LI
60S ribosomal protein L10
Chain LO
60S ribosomal protein L13a
Chain Lf
60S ribosomal protein L35a
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1092 s