IL_7F5S_087

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

7F5S|1|L5|G|2546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_087 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.2255

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7F5S|1|L5|G|2542
7F5S|1|L5|A|2543
7F5S|1|L5|G|2544
7F5S|1|L5|U|2545
7F5S|1|L5|G|2546
7F5S|1|L5|G|2547
*
7F5S|1|L5|C|2772
7F5S|1|L5|OMG|2773
7F5S|1|L5|C|2774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38