IL_7F5S_106

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

G(OMG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_106 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1029

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7F5S|1|L5|G|3626
7F5S|1|L5|OMG|3627
7F5S|1|L5|G|3628
*
7F5S|1|L5|C|3833
7F5S|1|L5|C|3834
7F5S|1|L5|C|3835

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23