IL_7F5S_135

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7F5S|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_135 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.093

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7F5S|1|L5|G|4405
7F5S|1|L5|U|4406
7F5S|1|L5|G|4407
*
7F5S|1|L5|U|4435
7F5S|1|L5|U|4436
7F5S|1|L5|U|4437
7F5S|1|L5|U|4438
7F5S|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10