IL_7F5S_148

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

G(PSU)U*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_148 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1915

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

7F5S|1|L5|G|4578
7F5S|1|L5|PSU|4579
7F5S|1|L5|U|4580
*
7F5S|1|L5|A|4723
7F5S|1|L5|A|4724
7F5S|1|L5|C|4725

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3