IL_7F5S_156

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7F5S|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_156 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.232

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7F5S|1|L5|G|4680
7F5S|1|L5|A|4681
7F5S|1|L5|U|4682
7F5S|1|L5|U|4683
7F5S|1|L5|A|4684
7F5S|1|L5|U|4685
*
7F5S|1|L5|A|4705
7F5S|1|L5|G|4706
7F5S|1|L5|A|4707
7F5S|1|L5|A|4708
7F5S|1|L5|U|4709
7F5S|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40