IL_7F5S_195

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_195 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.2559

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7F5S|1|L5|PSU|3715
7F5S|1|L5|C|3716
7F5S|1|L5|A|3717
7F5S|1|L5|A2M|3718
7F5S|1|L5|A|3719
7F5S|1|L5|G|3720
7F5S|1|L5|U|3721
*
7F5S|1|L5|A|3732
7F5S|1|L5|A|3733
7F5S|1|L5|PSU|3734
7F5S|1|L5|G|3735
7F5S|1|L5|A|3736
7F5S|1|L5|A|3737
7F5S|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a