IL_7F5S_196

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

7F5S|1|L5|A2M|3785, 7F5S|1|L5|C|3791, 7F5S|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_196 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0669

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7F5S|1|L5|C|3781
7F5S|1|L5|5MC|3782
7F5S|1|L5|A|3783
7F5S|1|L5|A|3784
7F5S|1|L5|A2M|3785
7F5S|1|L5|U|3786
7F5S|1|L5|G|3787
7F5S|1|L5|C|3788
7F5S|1|L5|C|3789
7F5S|1|L5|U|3790
7F5S|1|L5|C|3791
7F5S|1|L5|OMG|3792
*
7F5S|1|L5|OMC|3808
7F5S|1|L5|G|3809
7F5S|1|L5|C|3810
7F5S|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41