IL_7F8Z_002
3D structure
- PDB id
- 7F8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA kink-turn motif with 2-aminopurine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGGAG*CGA(2PR)GAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 2PR
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7F8Z_002 not in the Motif Atlas
- Geometric match to IL_5G4T_002
- Geometric discrepancy: 0.0815
- The information below is about IL_5G4T_002
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
7F8Z|1|A|G|13
7F8Z|1|A|G|14
7F8Z|1|A|G|15
7F8Z|1|A|A|16
7F8Z|1|A|G|17
*
7F8Z|1|B|C|3
7F8Z|1|B|G|4
7F8Z|1|B|A|5
7F8Z|1|B|2PR|6
7F8Z|1|B|G|7
7F8Z|1|B|A|8
7F8Z|1|B|A|9
7F8Z|1|B|C|10
Current chains
- Chain A
- RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
- Chain B
- RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Nearby chains
- Chain D
- RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
- Chain E
- RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
- Chain F
- RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
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