IL_7JJF_001

3D structure

PDB id

7JJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Sarcin-ricin loop with modified residue.

Experimental method

X-RAY DIFFRACTION

Resolution

1.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JJF_001 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.1448

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7JJF|1|A|C|52
7JJF|1|A|U|53
7JJF|1|A|A|54
7JJF|1|A|G|55
7JJF|1|A|U|56
7JJF|1|A|A|57
7JJF|1|A|C|58
*
7JJF|1|A|G|76
7JJF|1|A|G|77
7JJF|1|A|A|78
7JJF|1|A|C|79
7JJF|1|A|C|80
7JJF|1|A|G|81

Current chains

Chain A

RNA/DNA (27-mer)

Nearby chains