IL_7JQB_009

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_009 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1687

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7JQB|1|A|U|110
7JQB|1|A|A|111
7JQB|1|A|U|112
*
7JQB|1|A|A|349
7JQB|1|A|C|350
7JQB|1|A|G|351

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8

Chain M

40S ribosomal protein S4

Chain O

uS17