IL_7JQB_011
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQB_011 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.1776
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
7JQB|1|A|U|116
7JQB|1|A|C|117
7JQB|1|A|C|118
7JQB|1|A|U|119
7JQB|1|A|U|120
7JQB|1|A|U|121
*
7JQB|1|A|A|343
7JQB|1|A|U|344
7JQB|1|A|U|345
7JQB|1|A|C|346
7JQB|1|A|G|347
Current chains
- Chain A
- rRNA
Nearby chains
- Chain J
- eS8
- Chain M
- 40S ribosomal protein S4
Coloring options: