IL_7JQB_031

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_031 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2236

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

7JQB|1|A|U|566
7JQB|1|A|C|567
7JQB|1|A|C|568
7JQB|1|A|A|569
*
7JQB|1|A|U|581
7JQB|1|A|U|582
7JQB|1|A|A|583
7JQB|1|A|A|584

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24