IL_7JQB_046

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7JQB|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_046 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1058

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7JQB|1|A|G|924
7JQB|1|A|G|925
7JQB|1|A|A|926
7JQB|1|A|C|927
*
7JQB|1|A|G|1014
7JQB|1|A|U|1015
7JQB|1|A|U|1016
7JQB|1|A|U|1017
7JQB|1|A|U|1018

Current chains

Chain A

rRNA

Nearby chains

Chain P

uS15

Chain e

eS27