IL_7JQB_055

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_055 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1624

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7JQB|1|A|U|1101
7JQB|1|A|G|1102
7JQB|1|A|C|1103
*
7JQB|1|A|G|1129
7JQB|1|A|G|1130
7JQB|1|A|G|1131

Current chains

Chain A

rRNA

Nearby chains

Chain C

eS1

Chain P

uS15

Chain S

eS17

Chain e

eS27