IL_7JQB_068

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7JQB|1|A|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_068 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1507

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7JQB|1|A|U|1329
7JQB|1|A|G|1330
7JQB|1|A|C|1331
7JQB|1|A|A|1332
7JQB|1|A|U|1333
*
7JQB|1|A|A|1498
7JQB|1|A|U|1499
7JQB|1|A|G|1500

Current chains

Chain A

rRNA

Nearby chains

Chain E

Ribosomal protein S3

Chain L

S10_plectin domain-containing protein

Chain V

uS10