IL_7JQB_073
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7JQB|1|A|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQB_073 not in the Motif Atlas
- Geometric match to IL_8GLP_337
- Geometric discrepancy: 0.313
- The information below is about IL_8GLP_337
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
7JQB|1|A|C|1395
7JQB|1|A|A|1396
7JQB|1|A|U|1397
7JQB|1|A|G|1398
7JQB|1|A|C|1399
*
7JQB|1|A|G|1447
7JQB|1|A|A|1448
7JQB|1|A|G|1449
7JQB|1|A|G|1450
Current chains
- Chain A
- rRNA
Nearby chains
- Chain R
- Uncharacterized protein
- Chain S
- eS17
- Chain V
- uS10
- Chain h
- RACK1
Coloring options: