IL_7JQB_076

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_076 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.1727

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7JQB|1|A|A|1537
7JQB|1|A|C|1538
7JQB|1|A|U|1539
*
7JQB|1|A|A|1594
7JQB|1|A|U|1595
7JQB|1|A|U|1596

Current chains

Chain A

rRNA

Nearby chains

Chain G

uS7

Chain R

Uncharacterized protein

Chain T

uS13

Chain U

Uncharacterized protein

Chain a

eS25