IL_7JQC_010

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7JQC|1|A|G|113, 7JQC|1|A|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_010 not in the Motif Atlas

Geometric match to IL_4WF9_071

Geometric discrepancy: 0.1812

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7JQC|1|A|U|112
7JQC|1|A|G|113
7JQC|1|A|G|114
7JQC|1|A|U|115
*
7JQC|1|A|A|348
7JQC|1|A|A|349

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8

Chain M

40S ribosomal protein S4

Chain O

uS17