IL_7JQC_048

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7JQC|1|A|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_048 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1828

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7JQC|1|A|G|952
7JQC|1|A|C|953
7JQC|1|A|U|954
7JQC|1|A|A|955
7JQC|1|A|G|956
*
7JQC|1|A|C|967
7JQC|1|A|U|968
7JQC|1|A|U|969
7JQC|1|A|G|970
7JQC|1|A|G|971
7JQC|1|A|A|972
7JQC|1|A|C|973
7JQC|1|A|C|974

Current chains

Chain A

rRNA

Nearby chains

Chain C

eS1

Chain X

Uncharacterized protein