IL_7JQC_071

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7JQC|1|A|C|1701, 7JQC|1|A|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_071 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.2247

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7JQC|1|A|C|1700
7JQC|1|A|C|1701
7JQC|1|A|G|1702
*
7JQC|1|A|C|1833
7JQC|1|A|A|1834
7JQC|1|A|A|1835
7JQC|1|A|G|1836

Current chains

Chain A

rRNA

Nearby chains

Chain b

40S ribosomal protein S26