IL_7JQC_082

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_082 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2926

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7JQC|1|A|C|1750
7JQC|1|A|C|1751
7JQC|1|A|C|1752
*
7JQC|1|A|G|1780
7JQC|1|A|A|1781
7JQC|1|A|G|1782
7JQC|1|A|C|1783
7JQC|1|A|G|1784

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6