IL_7JQC_088

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUC*GAGGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_088 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3343

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7JQC|1|A|G|535
7JQC|1|A|A|536
7JQC|1|A|C|537
7JQC|1|A|U|538
7JQC|1|A|C|539
*
7JQC|1|A|G|544
7JQC|1|A|A|545
7JQC|1|A|G|546
7JQC|1|A|G|547
7JQC|1|A|C|548
7JQC|1|A|C|549

Current chains

Chain A

rRNA

Nearby chains

Chain f

eS30